{"created":"2021-03-01T06:14:15.532967+00:00","id":7592,"links":{},"metadata":{"_buckets":{"deposit":"5b5f45db-00cf-47e0-afc8-699f4265f7f6"},"_deposit":{"id":"7592","owners":[],"pid":{"revision_id":0,"type":"depid","value":"7592"},"status":"published"},"_oai":{"id":"oai:nagoya.repo.nii.ac.jp:00007592","sets":["320:321:322"]},"author_link":["21404","21405","21406","21407","21408"],"item_10_biblio_info_6":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicIssueDates":{"bibliographicIssueDate":"2007-07","bibliographicIssueDateType":"Issued"},"bibliographicPageEnd":"45","bibliographicPageStart":"37","bibliographicVolumeNumber":"3","bibliographic_titles":[{"bibliographic_title":"BIOPHYSICS","bibliographic_titleLang":"en"}]}]},"item_10_description_4":{"attribute_name":"抄録","attribute_value_mlt":[{"subitem_description":"The numbers of membrane proteins in the current genomes of various organisms provide an important clue about how the protein world has evolved from the aspect of membrane proteins. Numbers of membrane proteins were estimated by analyzing the total proteomes of 248 prokaryota, using the SOSUI system for membrane proteins (Hirokawa et al., Bioinformatics, 1998) and SOSUIsignal for signal peptides (Gomi et al., CBIJ, 2004). The results showed that the ratio of membrane proteins to total proteins in these proteomes was almost constant: 0.228. When amino acid sequences were randomized, setting the probability of occurrence of all amino acids to 5％, the membrane protein/total protein ratio decreased to about 0.085. However, when the same simulation was carried out, but using the amino acid composition of the above proteomes, this ratio was 0.218, which is nearly the same as that of the real proteomic systems. This fact is consistent with the birth, death and innovation (BDI) model for membrane proteins, in which transmembrane segments emerge and disappear in accordance with random mutation events.","subitem_description_language":"en","subitem_description_type":"Abstract"}]},"item_10_identifier_60":{"attribute_name":"URI","attribute_value_mlt":[{"subitem_identifier_type":"HDL","subitem_identifier_uri":"http://hdl.handle.net/2237/9298"}]},"item_10_publisher_32":{"attribute_name":"出版者","attribute_value_mlt":[{"subitem_publisher":"THE BIOPHYSICAL SOCIETY OF JAPAN","subitem_publisher_language":"en"}]},"item_10_relation_43":{"attribute_name":"関連情報","attribute_value_mlt":[{"subitem_relation_type":"isVersionOf","subitem_relation_type_id":{"subitem_relation_type_id_text":"http://www.jstage.jst.go.jp/article/biophysics/3/0/37/_pdf","subitem_relation_type_select":"URI"}}]},"item_10_select_15":{"attribute_name":"著者版フラグ","attribute_value_mlt":[{"subitem_select_item":"publisher"}]},"item_10_source_id_7":{"attribute_name":"ISSN","attribute_value_mlt":[{"subitem_source_identifier":"1349-2942","subitem_source_identifier_type":"PISSN"}]},"item_10_text_14":{"attribute_name":"フォーマット","attribute_value_mlt":[{"subitem_text_value":"application/pdf"}]},"item_1615787544753":{"attribute_name":"出版タイプ","attribute_value_mlt":[{"subitem_version_resource":"http://purl.org/coar/version/c_970fb48d4fbd8a85","subitem_version_type":"VoR"}]},"item_access_right":{"attribute_name":"アクセス権","attribute_value_mlt":[{"subitem_access_right":"open access","subitem_access_right_uri":"http://purl.org/coar/access_right/c_abf2"}]},"item_creator":{"attribute_name":"著者","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"Sawada, Ryusuke","creatorNameLang":"en"}],"nameIdentifiers":[{"nameIdentifier":"21404","nameIdentifierScheme":"WEKO"}]},{"creatorNames":[{"creatorName":"Ke, Runcong","creatorNameLang":"en"}],"nameIdentifiers":[{"nameIdentifier":"21405","nameIdentifierScheme":"WEKO"}]},{"creatorNames":[{"creatorName":"Tsuji, Toshiyuki","creatorNameLang":"en"}],"nameIdentifiers":[{"nameIdentifier":"21406","nameIdentifierScheme":"WEKO"}]},{"creatorNames":[{"creatorName":"Sonoyama, Masashi","creatorNameLang":"en"}],"nameIdentifiers":[{"nameIdentifier":"21407","nameIdentifierScheme":"WEKO"}]},{"creatorNames":[{"creatorName":"Mitaku, Shigeki","creatorNameLang":"en"}],"nameIdentifiers":[{"nameIdentifier":"21408","nameIdentifierScheme":"WEKO"}]}]},"item_files":{"attribute_name":"ファイル情報","attribute_type":"file","attribute_value_mlt":[{"accessrole":"open_date","date":[{"dateType":"Available","dateValue":"2018-02-19"}],"displaytype":"detail","filename":"09-sawada_et_al_BIOPHYSICS_in_press.pdf","filesize":[{"value":"239.1 kB"}],"format":"application/pdf","licensetype":"license_note","mimetype":"application/pdf","url":{"label":"09-sawada_et_al_BIOPHYSICS_in_press.pdf","objectType":"fulltext","url":"https://nagoya.repo.nii.ac.jp/record/7592/files/09-sawada_et_al_BIOPHYSICS_in_press.pdf"},"version_id":"7c8225f6-7084-4f3f-82c0-e94656a3e18f"}]},"item_keyword":{"attribute_name":"キーワード","attribute_value_mlt":[{"subitem_subject":"membrane protein prediction","subitem_subject_scheme":"Other"},{"subitem_subject":"sequence simulation","subitem_subject_scheme":"Other"},{"subitem_subject":"evolutionary simulation","subitem_subject_scheme":"Other"},{"subitem_subject":"large-scale genome comparison","subitem_subject_scheme":"Other"},{"subitem_subject":"comparative proteomics","subitem_subject_scheme":"Other"},{"subitem_subject":"protein world","subitem_subject_scheme":"Other"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourcetype":"journal article","resourceuri":"http://purl.org/coar/resource_type/c_6501"}]},"item_title":"Ratio of membrane proteins in total proteomes of prokaryota","item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"Ratio of membrane proteins in total proteomes of prokaryota","subitem_title_language":"en"}]},"item_type_id":"10","owner":"1","path":["322"],"pubdate":{"attribute_name":"PubDate","attribute_value":"2008-01-16"},"publish_date":"2008-01-16","publish_status":"0","recid":"7592","relation_version_is_last":true,"title":["Ratio of membrane proteins in total proteomes of prokaryota"],"weko_creator_id":"1","weko_shared_id":-1},"updated":"2023-01-16T03:53:03.162517+00:00"}