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Data used to search for candidate genes for a quantitative trait locus affecting open field behavior in an F2 population between NAG and WL-G breeds of chickens
https://doi.org/10.18999/2003797
https://doi.org/10.18999/200379767840c05-9d93-4d8f-9c4f-489a98c557dd
Item type | itemtype_data_ver2(1) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
公開日 | 2022-09-20 | |||||||||
タイトル | ||||||||||
タイトル | Data used to search for candidate genes for a quantitative trait locus affecting open field behavior in an F2 population between NAG and WL-G breeds of chickens | |||||||||
言語 | en | |||||||||
その他のタイトル | ||||||||||
その他のタイトル | ニワトリNAG品種とWL-G品種間F2集団におけるオープンフィールド行動に関わる量的形質遺伝子座の候補遺伝子探索に用いたデータ | |||||||||
言語 | ja | |||||||||
作成者 |
石川, 明
× 石川, 明
|
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寄与者 | ||||||||||
寄与者識別子 | 20211724 | |||||||||
寄与者識別子Scheme | e-Rad | |||||||||
寄与者識別子URI | https://kaken.nii.ac.jp/ja/search/?qm=20211724 | |||||||||
寄与者タイプ | ContactPerson | |||||||||
姓名 | 石川, 明 | |||||||||
言語 | ja | |||||||||
姓名 | Ishikawa, Akira | |||||||||
言語 | en | |||||||||
アクセス権 | ||||||||||
アクセス権 | open access | |||||||||
アクセス権URI | http://purl.org/coar/access_right/c_abf2 | |||||||||
内容記述 | ||||||||||
内容記述 | Six files and one folder present data on the search for candidate genes for a quantitative trait locus (QTL) affecting open field behavior in an F2 population between NAG and WL-G breeds of chickens. Haplotype_frequency_analysis.xlsx contains the haplotypes of seven genes in the top and bottom chickens selected from the F2 population. QTL_analysis.xlsx contains the phenotypic and genotypic data used for QTL analysis in 241 F2 chickens. RNA-seq_reads.xlsx contains TMM reads and log fold changes obtained by RNA-seq anlysis of 333 genes in each sex of the top and bottom F2 chickens. RT-qPCR_analysis.xlsx contains raw data for diencephalic expression levels of 34 genes quantified by RT-qPCR analysis in each of NAG, WL and their F1 chickens. Selected_F2.xlsx contains a list of the top and bottom F2 chickens.Trait_data.xlsx contains raw and adjusted data for seven open field traits and first and second principal component (PC1 and PC2) scores in all F2 chickens. The OF_trajectories folder contains the open field behavior trajectories and read.me for all F2 chickens. | |||||||||
言語 | en | |||||||||
内容記述タイプ | Abstract | |||||||||
内容記述 | ||||||||||
内容記述 | 6つのファイルと1つのフォルダには、ニワトリのNAG品種とWL-G品種間のF2集団において、オープンフィールド行動に関与する量的形質遺伝子座(QTL)の候補遺伝子を探索したデータが含まれている。Haplotype_frequency_analysis.xlsxは、F2集団から選択した上位と下位のニワトリにおける7遺伝子のハプロタイプを収録している。QTL_analysis.xlsxは、241羽のF2ニワトリのQTL解析に用いた表現型と遺伝子型データを含んでいる。RNA-seq_reads.xlsx は、上下F2ニワトリの各性における333遺伝子のRNA-seq解析で得られたTMMリードとlog fold changeを含んでいる。RT-qPCR_analysis.xlsxは、NAG、WLおよびそれらのF1雑種に関する、RT-qPCR解析により定量した34遺伝子の間脳部発現量の生データを含んでいる。Selected_F2.xlsxは、上位と下位のF2ニワトリのリストを含んでいる。Trait_data.xlsxは、すべてのF2ニワトリにおける7つのオープンフィールド形質および第1と第2主成分(PC1とPC2)スコアの生データと調整済みデータを含んでいる。OF_trajectories フォルダは、すべての F2 ニワトリのオープンフィールド行動軌跡と read.me が含んでいる。 | |||||||||
言語 | ja | |||||||||
内容記述タイプ | Abstract | |||||||||
公開者 | ||||||||||
言語 | ja | |||||||||
公開者 | 名古屋大学 | |||||||||
言語 | ||||||||||
言語 | eng | |||||||||
資源タイプ | ||||||||||
資源タイプresource | http://purl.org/coar/resource_type/c_ddb1 | |||||||||
資源タイプ | dataset | |||||||||
ID登録 | ||||||||||
ID登録 | 10.18999/2003797 | |||||||||
ID登録タイプ | JaLC | |||||||||
書誌情報 |
発行日 2022-09-19 |