| Item type |
itemtype_ver1(1) |
| 公開日 |
2023-06-07 |
| タイトル |
|
|
タイトル |
Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis (ex Whittenbury et al. 1970) Bowman et al. 1993 |
|
言語 |
en |
| 著者 |
Kaise, Hirotaka
Sawadogo, Joseph Benewindé
Alam, Mohammad Saiful
Ueno, Chihoko
Dianou, Dayéri
Shinjo, Rina
Asakawa, Susumu
|
| アクセス権 |
|
|
アクセス権 |
open access |
|
アクセス権URI |
http://purl.org/coar/access_right/c_abf2 |
| 権利 |
|
|
言語 |
en |
|
権利情報 |
CC-BY-NC-ND '© [Hirotaka Kaise, Joseph Benewindé Sawadogo, Mohammad Saiful Alam, Chihoko Ueno, Dayéri Dianou, Rina Shinjo, Susumu Asakawa, 2023]. The definitive peer reviewed, edited version of this article is published in [International Journal of Systematic and Evolutionary Microbiology, 73, 6, 2023, 10.1099/ijsem.0.005925].' |
| キーワード |
|
|
主題Scheme |
Other |
|
主題 |
Flagella |
| キーワード |
|
|
主題Scheme |
Other |
|
主題 |
Methylocystis iwaonis |
| キーワード |
|
|
主題Scheme |
Other |
|
主題 |
motility |
| キーワード |
|
|
主題Scheme |
Other |
|
主題 |
rice paddy field |
| キーワード |
|
|
主題Scheme |
Other |
|
主題 |
surface soil |
| キーワード |
|
|
主題Scheme |
Other |
|
主題 |
type II methane-oxidizing bacteria |
| 内容記述 |
|
|
内容記述タイプ |
Abstract |
|
内容記述 |
A novel methane-oxidizing bacterial strain SS37A-ReT was isolated from surface soil of a rice paddy field in Japan. Cells were Gram-stain-negative, motile rods with single polar flagellum and type II intracytoplasmic membrane arrangement. The strain grew on methane or methanol as the sole carbon and energy source. It grew at 15–37 °C (optimum 25–30 °C), pH 6.0–9.0 (optimum 7.0–8.0) and with 0–0.1 % (w/w) NaCl (no growth at 0.5 % or above). Cells formed cysts, but not exospores. The results of sequence analysis of the 16S rRNA gene indicated that SS37A-ReT represented a member of the family Methylocystaceae, with the highest similarity (98.9 %) to Methylocystis parva corrig. OBBPT. Phylogenetic analysis of pmoA and mxaF genes and core genes in the genome indicated that the strain was closely related to the members of the genus Methylocystis, while the analysis of the mmoX gene indicated the close relationships with the genus Methylosinus. The values of genome relatedness between SS37A-ReT and species of the genera Methylocystis and Methylosinus were 78.6–82.5% and 21.7–24.9 % estimated by the average nucleotide identity and digital DNA–DNA hybridisation, respectively, showing the highest values with Methylocystis echinoides LMG 27198T. The DNA G+C content was 63.2 mol% (genome). The major quinone and fatty acids were Q-8 and, C18 : 1 (C18 : 1ω8t and C18 : 1ω8c) and C18 : 2, respectively. On the basis of the phenotypic and phylogenetic features, the strain represents a novel species of the genus Methylocystis, for which the name Methylocystis iwaonis sp. nov. is proposed. The type strain is SS37A-ReT (=JCM 34278T =NBRC 114996T=KCTC 82710T). |
|
言語 |
en |
| 出版者 |
|
|
出版者 |
Microbiology Society |
|
言語 |
en |
| 言語 |
|
|
言語 |
eng |
| 資源タイプ |
|
|
資源タイプ識別子 |
http://purl.org/coar/resource_type/c_6501 |
|
資源タイプ |
journal article |
| 出版タイプ |
|
|
出版タイプ |
AM |
|
出版タイプResource |
http://purl.org/coar/version/c_ab4af688f83e57aa |
| 関連情報 |
|
|
関連タイプ |
isVersionOf |
|
|
識別子タイプ |
DOI |
|
|
関連識別子 |
https://doi.org/10.1099/ijsem.0.005925 |
| 収録物識別子 |
|
|
収録物識別子タイプ |
PISSN |
|
収録物識別子 |
1466-5026 |
| 書誌情報 |
en : International Journal of Systematic and Evolutionary Microbiology
巻 73,
号 6,
p. 005925,
発行日 2023-06-06
|
IJSEM-D-22-00802R2r.pdf (3.8 MB)
