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Ratio of membrane proteins in total proteomes of prokaryota
http://hdl.handle.net/2237/9298
http://hdl.handle.net/2237/92982b46a007-ad99-4590-aba1-809a1462f55a
名前 / ファイル | ライセンス | アクション |
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2008-01-16 | |||||
タイトル | ||||||
タイトル | Ratio of membrane proteins in total proteomes of prokaryota | |||||
言語 | en | |||||
著者 |
Sawada, Ryusuke
× Sawada, Ryusuke× Ke, Runcong× Tsuji, Toshiyuki× Sonoyama, Masashi× Mitaku, Shigeki |
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アクセス権 | ||||||
アクセス権 | open access | |||||
アクセス権URI | http://purl.org/coar/access_right/c_abf2 | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | membrane protein prediction | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | sequence simulation | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | evolutionary simulation | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | large-scale genome comparison | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | comparative proteomics | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | protein world | |||||
抄録 | ||||||
内容記述 | The numbers of membrane proteins in the current genomes of various organisms provide an important clue about how the protein world has evolved from the aspect of membrane proteins. Numbers of membrane proteins were estimated by analyzing the total proteomes of 248 prokaryota, using the SOSUI system for membrane proteins (Hirokawa et al., Bioinformatics, 1998) and SOSUIsignal for signal peptides (Gomi et al., CBIJ, 2004). The results showed that the ratio of membrane proteins to total proteins in these proteomes was almost constant: 0.228. When amino acid sequences were randomized, setting the probability of occurrence of all amino acids to 5%, the membrane protein/total protein ratio decreased to about 0.085. However, when the same simulation was carried out, but using the amino acid composition of the above proteomes, this ratio was 0.218, which is nearly the same as that of the real proteomic systems. This fact is consistent with the birth, death and innovation (BDI) model for membrane proteins, in which transmembrane segments emerge and disappear in accordance with random mutation events. | |||||
言語 | en | |||||
内容記述タイプ | Abstract | |||||
出版者 | ||||||
言語 | en | |||||
出版者 | THE BIOPHYSICAL SOCIETY OF JAPAN | |||||
言語 | ||||||
言語 | eng | |||||
資源タイプ | ||||||
資源タイプresource | http://purl.org/coar/resource_type/c_6501 | |||||
タイプ | journal article | |||||
出版タイプ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 | |||||
関連情報 | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | URI | |||||
関連識別子 | http://www.jstage.jst.go.jp/article/biophysics/3/0/37/_pdf | |||||
ISSN | ||||||
収録物識別子タイプ | PISSN | |||||
収録物識別子 | 1349-2942 | |||||
書誌情報 |
en : BIOPHYSICS 巻 3, p. 37-45, 発行日 2007-07 |
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フォーマット | ||||||
application/pdf | ||||||
著者版フラグ | ||||||
値 | publisher | |||||
URI | ||||||
識別子 | http://hdl.handle.net/2237/9298 | |||||
識別子タイプ | HDL |